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NOTE: SteinerNet jobs can take over 24 hours to complete

Revealing the Hidden Components in Regulatory and Signaling Networks by Integrating Proteomics, Transcriptome and Interactome Data

Sample files: Interactome File, Terminal file, and Transcription factor to DNA file

Protein-Protein Interactions


Upload an interactome here:
OR select a database interactome:

OR paste a list:

Terminal Nodes with Penalties


Upload terminals file here*:
OR paste a list of proteins or genes with penalty values*:
*Please check the input format for terminals
**Terminal names must be consistent with naming in the interactome. Some external pages can be used to convert names if you need; such as DAVID, or HUGO

(OPTIONAL)Transcription Factor to DNA Interactions


Upload a file here:
OR select a database for TF to DNA interactions:
OR Paste the TF to DNA interactions:
Beta for Protein Terminals:
Beta for DNA Terminals:
Your Email Address:

References:

1. Huang S.S., Fraenkel E. Integrating proteomic, transcriptional, and interactome data reveals hidden components of signaling and regulatory networks Science Signaling (2009) 2(81):ra40.

2. Tuncbag N., McCallum S., Huang S.S. Fraenkel E. SteinerNet: A Web Server for Integrating "Omic" data to Discover Hidden Components of Response Pathways Nucl. Acids Res. (2012) doi: 10.1093/nar/gks445.


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