TAMO.paths: Path information for TAMO Bioninformatics Modules
 
   NOTE: When adding entries, append a "/" to directory names
   to facilitate TAMO.paths.variable + "filename" convention
 
   Instructions for downloading Motif Discovery Programs
   (AlignACE, MEME, & MDscan) can be found near the end
   of the file.
 
Copyright (2005) Whitehead Institute for Biomedical Research
All Rights Reserved
Author: David Benjamin Gordon

Modules
		os sys

Functions
		CHECK(filelist, arg, note='') Check whether the files can be found in the expected locations.  If not, suggest how they might be retrieved.

Data
		AlignACEdir = '/etc/TAMOdata/MDprogs/alignace2004/' BGdir = '/etc/TAMOdata/fsafiles/' FSAdir = '/etc/TAMOdata/fsafiles/' Holstegedir = '/etc/TAMOdata/Holstege/' Human13kArraydir = '/etc/TAMOdata/Whitehead/Human13kArray/' HumanSeqdir = '/etc/TAMOdata/HumanSeq/' MDscandir = '/etc/TAMOdata/MDprogs/MDscan/' MEMEdir = '/etc/TAMOdata/MDprogs/meme.3.0.13/' Novartisdir = '/etc/TAMOdata/Novartis/' SGDdir = '/etc/TAMOdata/SGD/' TAMOdata = '/etc/TAMOdata/' TAMOroot = '/etc/TAMO/' THEMEroot = '/etc/TAMO/' Whiteheaddir = '/etc/TAMOdata/Whitehead/' Yeast6kArraydir = '/etc/TAMOdata/Whitehead/Yeast6kArray/' weblogodir = '/etc/TAMOdata/weblogo/'