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- __builtin__.object
-
- DoubleVector
-
- DoubleVectorPtr
- IntVector
-
- IntVectorPtr
- Probe
-
- ProbePtr
- Probelist
-
- ProbelistPtr
- Probelist_str
-
- Probelist_strPtr
- SeqMat
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- SeqMatPtr
class Probe(__builtin__.object) |
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Methods defined here:
- __del__(self, destroy=<built-in function delete_Probe>)
- __getattr__ lambda self, name
- __init__(self, *args)
- __repr__(self)
- __setattr__ lambda self, name, value
Properties defined here:
- Zs
- get = Probe_Zs_get(...)
- set = Probe_Zs_set(...)
- iseq
- get = Probe_iseq_get(...)
- set = Probe_iseq_set(...)
- len
- get = Probe_len_get(...)
- set = Probe_len_set(...)
- probebg
- get = Probe_probebg_get(...)
- set = Probe_probebg_set(...)
- wmerbgs
- get = Probe_wmerbgs_get(...)
- set = Probe_wmerbgs_set(...)
Data and other attributes defined here:
- __dict__ = <dictproxy object>
- dictionary for instance variables (if defined)
- __swig_getmethods__ = {'Zs': <built-in function Probe_Zs_get>, 'iseq': <built-in function Probe_iseq_get>, 'len': <built-in function Probe_len_get>, 'probebg': <built-in function Probe_probebg_get>, 'wmerbgs': <built-in function Probe_wmerbgs_get>}
- __swig_setmethods__ = {'Zs': <built-in function Probe_Zs_set>, 'iseq': <built-in function Probe_iseq_set>, 'len': <built-in function Probe_len_set>, 'probebg': <built-in function Probe_probebg_set>, 'wmerbgs': <built-in function Probe_wmerbgs_set>}
- __weakref__ = <attribute '__weakref__' of 'Probe' objects>
- list of weak references to the object (if defined)
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class ProbePtr(Probe) |
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- Method resolution order:
- ProbePtr
- Probe
- __builtin__.object
Methods defined here:
- __init__(self, this)
Methods inherited from Probe:
- __del__(self, destroy=<built-in function delete_Probe>)
- __getattr__ lambda self, name
- __repr__(self)
- __setattr__ lambda self, name, value
Properties inherited from Probe:
- Zs
- get = Probe_Zs_get(...)
- set = Probe_Zs_set(...)
- iseq
- get = Probe_iseq_get(...)
- set = Probe_iseq_set(...)
- len
- get = Probe_len_get(...)
- set = Probe_len_set(...)
- probebg
- get = Probe_probebg_get(...)
- set = Probe_probebg_set(...)
- wmerbgs
- get = Probe_wmerbgs_get(...)
- set = Probe_wmerbgs_set(...)
Data and other attributes inherited from Probe:
- __dict__ = <dictproxy object>
- dictionary for instance variables (if defined)
- __swig_getmethods__ = {'Zs': <built-in function Probe_Zs_get>, 'iseq': <built-in function Probe_iseq_get>, 'len': <built-in function Probe_len_get>, 'probebg': <built-in function Probe_probebg_get>, 'wmerbgs': <built-in function Probe_wmerbgs_get>}
- __swig_setmethods__ = {'Zs': <built-in function Probe_Zs_set>, 'iseq': <built-in function Probe_iseq_set>, 'len': <built-in function Probe_len_set>, 'probebg': <built-in function Probe_probebg_set>, 'wmerbgs': <built-in function Probe_wmerbgs_set>}
- __weakref__ = <attribute '__weakref__' of 'Probe' objects>
- list of weak references to the object (if defined)
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class Probelist(__builtin__.object) |
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Methods defined here:
- __del__(self, destroy=<built-in function delete_Probelist>)
- __getattr__ lambda self, name
- __init__(self, *args)
- __repr__(self)
- __setattr__ lambda self, name, value
- append(*args)
- get_Z(*args)
- get_Zlist(*args)
Properties defined here:
- count
- get = Probelist_count_get(...)
- set = Probelist_count_set(...)
- probes
- get = Probelist_probes_get(...)
- set = Probelist_probes_set(...)
Data and other attributes defined here:
- __dict__ = <dictproxy object>
- dictionary for instance variables (if defined)
- __swig_getmethods__ = {'count': <built-in function Probelist_count_get>, 'probes': <built-in function Probelist_probes_get>}
- __swig_setmethods__ = {'count': <built-in function Probelist_count_set>, 'probes': <built-in function Probelist_probes_set>}
- __weakref__ = <attribute '__weakref__' of 'Probelist' objects>
- list of weak references to the object (if defined)
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class ProbelistPtr(Probelist) |
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- Method resolution order:
- ProbelistPtr
- Probelist
- __builtin__.object
Methods defined here:
- __init__(self, this)
Methods inherited from Probelist:
- __del__(self, destroy=<built-in function delete_Probelist>)
- __getattr__ lambda self, name
- __repr__(self)
- __setattr__ lambda self, name, value
- append(*args)
- get_Z(*args)
- get_Zlist(*args)
Properties inherited from Probelist:
- count
- get = Probelist_count_get(...)
- set = Probelist_count_set(...)
- probes
- get = Probelist_probes_get(...)
- set = Probelist_probes_set(...)
Data and other attributes inherited from Probelist:
- __dict__ = <dictproxy object>
- dictionary for instance variables (if defined)
- __swig_getmethods__ = {'count': <built-in function Probelist_count_get>, 'probes': <built-in function Probelist_probes_get>}
- __swig_setmethods__ = {'count': <built-in function Probelist_count_set>, 'probes': <built-in function Probelist_probes_set>}
- __weakref__ = <attribute '__weakref__' of 'Probelist' objects>
- list of weak references to the object (if defined)
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class Probelist_str(__builtin__.object) |
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Methods defined here:
- __del__(self, destroy=<built-in function delete_Probelist_str>)
- __getattr__ lambda self, name
- __init__(self, *args)
- __repr__(self)
- __setattr__ lambda self, name, value
- append(*args)
- count_re_matches(*args)
Properties defined here:
- count
- get = Probelist_str_count_get(...)
- set = Probelist_str_count_set(...)
- probes
- get = Probelist_str_probes_get(...)
- set = Probelist_str_probes_set(...)
Data and other attributes defined here:
- __dict__ = <dictproxy object>
- dictionary for instance variables (if defined)
- __swig_getmethods__ = {'count': <built-in function Probelist_str_count_get>, 'probes': <built-in function Probelist_str_probes_get>}
- __swig_setmethods__ = {'count': <built-in function Probelist_str_count_set>, 'probes': <built-in function Probelist_str_probes_set>}
- __weakref__ = <attribute '__weakref__' of 'Probelist_str' objects>
- list of weak references to the object (if defined)
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class Probelist_strPtr(Probelist_str) |
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- Method resolution order:
- Probelist_strPtr
- Probelist_str
- __builtin__.object
Methods defined here:
- __init__(self, this)
Methods inherited from Probelist_str:
- __del__(self, destroy=<built-in function delete_Probelist_str>)
- __getattr__ lambda self, name
- __repr__(self)
- __setattr__ lambda self, name, value
- append(*args)
- count_re_matches(*args)
Properties inherited from Probelist_str:
- count
- get = Probelist_str_count_get(...)
- set = Probelist_str_count_set(...)
- probes
- get = Probelist_str_probes_get(...)
- set = Probelist_str_probes_set(...)
Data and other attributes inherited from Probelist_str:
- __dict__ = <dictproxy object>
- dictionary for instance variables (if defined)
- __swig_getmethods__ = {'count': <built-in function Probelist_str_count_get>, 'probes': <built-in function Probelist_str_probes_get>}
- __swig_setmethods__ = {'count': <built-in function Probelist_str_count_set>, 'probes': <built-in function Probelist_str_probes_set>}
- __weakref__ = <attribute '__weakref__' of 'Probelist_str' objects>
- list of weak references to the object (if defined)
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class SeqMat(__builtin__.object) |
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Methods defined here:
- EMstep(*args)
- __del__(self, destroy=<built-in function delete_SeqMat>)
- __getattr__ lambda self, name
- __init__(self, *args)
- __repr__(self)
- __setattr__ lambda self, name, value
- compute_ambig(*args)
- get(*args)
- get_c(*args)
- loglikelihood(*args)
- matchstarts(*args)
- scanbest(*args)
- score(*args)
- score_probe(*args)
- set(*args)
- setBg(*args)
- setmask(*args)
- sumscoresabove(*args)
Properties defined here:
- beta
- get = SeqMat_beta_get(...)
- set = SeqMat_beta_set(...)
- bg
- get = SeqMat_bg_get(...)
- set = SeqMat_bg_set(...)
- deltamin
- get = SeqMat_deltamin_get(...)
- set = SeqMat_deltamin_set(...)
- gamma
- get = SeqMat_gamma_get(...)
- set = SeqMat_gamma_set(...)
- gamma_wt
- get = SeqMat_gamma_wt_get(...)
- set = SeqMat_gamma_wt_set(...)
- joint
- get = SeqMat_joint_get(...)
- set = SeqMat_joint_set(...)
- mask
- get = SeqMat_mask_get(...)
- set = SeqMat_mask_set(...)
- width
- get = SeqMat_width_get(...)
- set = SeqMat_width_set(...)
Data and other attributes defined here:
- __dict__ = <dictproxy object>
- dictionary for instance variables (if defined)
- __swig_getmethods__ = {'beta': <built-in function SeqMat_beta_get>, 'bg': <built-in function SeqMat_bg_get>, 'deltamin': <built-in function SeqMat_deltamin_get>, 'gamma': <built-in function SeqMat_gamma_get>, 'gamma_wt': <built-in function SeqMat_gamma_wt_get>, 'joint': <built-in function SeqMat_joint_get>, 'mask': <built-in function SeqMat_mask_get>, 'width': <built-in function SeqMat_width_get>}
- __swig_setmethods__ = {'beta': <built-in function SeqMat_beta_set>, 'bg': <built-in function SeqMat_bg_set>, 'deltamin': <built-in function SeqMat_deltamin_set>, 'gamma': <built-in function SeqMat_gamma_set>, 'gamma_wt': <built-in function SeqMat_gamma_wt_set>, 'joint': <built-in function SeqMat_joint_set>, 'mask': <built-in function SeqMat_mask_set>, 'width': <built-in function SeqMat_width_set>}
- __weakref__ = <attribute '__weakref__' of 'SeqMat' objects>
- list of weak references to the object (if defined)
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class SeqMatPtr(SeqMat) |
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- Method resolution order:
- SeqMatPtr
- SeqMat
- __builtin__.object
Methods defined here:
- __init__(self, this)
Methods inherited from SeqMat:
- EMstep(*args)
- __del__(self, destroy=<built-in function delete_SeqMat>)
- __getattr__ lambda self, name
- __repr__(self)
- __setattr__ lambda self, name, value
- compute_ambig(*args)
- get(*args)
- get_c(*args)
- loglikelihood(*args)
- matchstarts(*args)
- scanbest(*args)
- score(*args)
- score_probe(*args)
- set(*args)
- setBg(*args)
- setmask(*args)
- sumscoresabove(*args)
Properties inherited from SeqMat:
- beta
- get = SeqMat_beta_get(...)
- set = SeqMat_beta_set(...)
- bg
- get = SeqMat_bg_get(...)
- set = SeqMat_bg_set(...)
- deltamin
- get = SeqMat_deltamin_get(...)
- set = SeqMat_deltamin_set(...)
- gamma
- get = SeqMat_gamma_get(...)
- set = SeqMat_gamma_set(...)
- gamma_wt
- get = SeqMat_gamma_wt_get(...)
- set = SeqMat_gamma_wt_set(...)
- joint
- get = SeqMat_joint_get(...)
- set = SeqMat_joint_set(...)
- mask
- get = SeqMat_mask_get(...)
- set = SeqMat_mask_set(...)
- width
- get = SeqMat_width_get(...)
- set = SeqMat_width_set(...)
Data and other attributes inherited from SeqMat:
- __dict__ = <dictproxy object>
- dictionary for instance variables (if defined)
- __swig_getmethods__ = {'beta': <built-in function SeqMat_beta_get>, 'bg': <built-in function SeqMat_bg_get>, 'deltamin': <built-in function SeqMat_deltamin_get>, 'gamma': <built-in function SeqMat_gamma_get>, 'gamma_wt': <built-in function SeqMat_gamma_wt_get>, 'joint': <built-in function SeqMat_joint_get>, 'mask': <built-in function SeqMat_mask_get>, 'width': <built-in function SeqMat_width_get>}
- __swig_setmethods__ = {'beta': <built-in function SeqMat_beta_set>, 'bg': <built-in function SeqMat_bg_set>, 'deltamin': <built-in function SeqMat_deltamin_set>, 'gamma': <built-in function SeqMat_gamma_set>, 'gamma_wt': <built-in function SeqMat_gamma_wt_set>, 'joint': <built-in function SeqMat_joint_set>, 'mask': <built-in function SeqMat_mask_set>, 'width': <built-in function SeqMat_width_set>}
- __weakref__ = <attribute '__weakref__' of 'SeqMat' objects>
- list of weak references to the object (if defined)
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