Python: module TAMO.seq.FakeFasta

TAMO.seq.FakeFasta

index
/home/David_Gordon/docs/TAMO/seq/FakeFasta.py

FakeFasta.py -- Utilities for generating and analyzing "fake" Fasta-formatted sequences. Copyright (2005) Whitehead Institute for Biomedical Research (except as noted below) All Rights Reserved Author: David Benjamin Gordon

Modules

TAMO.seq.GenerateFastas
TAMO.MotifMetrics
math
os
random
re
shelve
string
sys
tempfile
time

Functions

Fake_seq(length)

Fake_seqs(number, length)

count_matches(motif, seqlist)

main()

random_seqs(numseq=50, genome='YEAST', want_dict=None)

seed(seqlist, motif, probability=1, emitprob=0.10000000000000001)

seed_random_seqD(motif, probability, numseq=50, genome='YEAST', emitprob=0.10000000000000001)

Data

ALL_IDS = []
BADPROBEFILES = []
BADPROBES = []
PROBESETS = {}
alphabet = ['A', 'C', 'T', 'G']

Data
		ALL_IDS = [] BADPROBEFILES = [] BADPROBES = [] PROBESETS = {} alphabet = ['A', 'C', 'T', 'G']